Default configuration for the diffusion kernel based t-sne

Source: R/get_layout.R

A list with parameters customizing configuration for the diffusion kernel based t-sne (see 'tsne' R package documentation)

TL_tsne.default

Format

An object of class metanetwork_config of length 11.

Examples

# display all default settings
TL_tsne.default
#> $max_iter
#> [1] 300
#> 
#> $min_cost
#> [1] 0
#> 
#> $epoch_callback
#> NULL
#> 
#> $epoch
#> [1] 100
#> 
#> $momentum
#> [1] 0.01
#> 
#> $final_momentum
#> [1] 0.3
#> 
#> $mom_switch_iter
#> [1] 250
#> 
#> $epsilon
#> [1] 2
#> 
#> $min_gain
#> [1] 0.01
#> 
#> $initial_P_gain
#> [1] 4
#> 
#> $eps
#> [1] 2.220446e-16
#> 
#> attr(,"class")
#> [1] "metanetwork_config"

# create a new settings object with n_neighbors set to 5
TL_tsne.custom = TL_tsne.default
TL_tsne.custom$max_iter = 5
TL_tsne.custom
#> $max_iter
#> [1] 5
#> 
#> $min_cost
#> [1] 0
#> 
#> $epoch_callback
#> NULL
#> 
#> $epoch
#> [1] 100
#> 
#> $momentum
#> [1] 0.01
#> 
#> $final_momentum
#> [1] 0.3
#> 
#> $mom_switch_iter
#> [1] 250
#> 
#> $epsilon
#> [1] 2
#> 
#> $min_gain
#> [1] 0.01
#> 
#> $initial_P_gain
#> [1] 4
#> 
#> $eps
#> [1] 2.220446e-16
#> 
#> attr(,"class")
#> [1] "metanetwork_config"